Welcome to Fall 2022

Dear Fall M-20 Students: WELCOME TO MICROBIOLOGY at LACC! Monday, you will receive an email alerting you that our Syllabus and Canvas sight is active. Please peruse the website (click on the links) and look over how the course is organized: HINT: BY EXAM number.. Until then there are a few things that you could do now to prepare; some of them may be found on my "old" website" at hicksmicro@blogspot.com (ignore any not safe or unsafe "site" notifications). Lecture: YOU DO NOT NEED TO BUY A TEXTBOOK or LAB MANUAL! Go to YouTube and subscribe to our hicksmicro YouTube site. Read page 1 of the old website . "My philosophy of Education & How to get an "A" in Microbiology" then move down the page & click on the BLUE button for the MicroDropBox. Inside MicroDropbox go to "Tests & Ancillary Materials." Download a copy of an old edition of our Textbook "Microbiology: Principles & Explorations" by Black and read the textbook Introduction, Chapter 1 "Why Study Microbiology" & Chapter 2 a review of Chemistry - dont panic! We just need you to know basics like: atoms, elements, the Periodic Chart, bonds, molecules & compounds. This is OYO (On your own - no lecture but it will be expected). Laboratory Needs: 1. Go to the LACC Bookstore and purchase the Microbiology-20 Lab Packet. 2. Buy a long sleeve and long torso (to the knee area) WHITE cotton or cotton mix Lab coat (on Amazon for $10 and up). REMEMBER BECAUSE OF BUNSEN BURNERS, IT GETS HOT IN LAB EVEN WITH A/C... the more cotton in the coat the better it "breaths" the more poly material the more you will sweat. 3. Buy a set of colored Pencils 4. Buy a can of "Bon Ami" scouring powder (or "Bartender's Friend" NO OTHER BRANDS, in supermarkets near Ajax etc. 5. Buy a Small hand-held battery fan 6. Buy a small box of matches. 7. Buy a binder for 3 holed papers - NOT A BINDER WITH METAL RINGS, 1 the can hold 1 inch of handouts and worksheets ands has metal tabs the you "bend" to close it. 8. Buy a small bottle of hand sanitizer YOU DO NOT NEED TO BUY LAB FACEMASKS,FACE SHIELDS,or a LAB MANUAL AS WE PROVIDE THEM for you as "loaner materials." Thanks for OPTIONAL: a box of Nitrile Gloves (that fit you) a broad/wide point (NOT FINE POINT) BLACK SHARPEE that clicks closed/no cap. Thanks for taking my class! if you are dedicated and keep trying I will "drag you" to success in Microbiology 20! Emails: hicksmicro@gmail.com in the Subject put last name 1st ID # and a "hook" that indicates the question Text: 213-246-3783 The same as above regarding the info 1st in the text

ACID FAST 8/22/22




ACID FAST STAIN 
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Atlas page 29

The Acid Fast Stain was developed for the GENUS MYCOBACTERIUM which contain species that cause Tuberculosis, Leprosy, and other fatal illnesses.   We use one of two non-pathogenic Mycobacterium in our classes for demonstration.   
Mycobacterium are notoriously hard to kill and hard to stain; they also grow very very slowly.  All of these characteristics of the microbe are due to the veryTHICK LIPID LAYER in the cell wall.  As you might expect, the Mycobacterium stain Gram-positive because of the THICK cell wall.  REMEMBER... the peptidogycan layer in Mycobacteria is THIN but it stains Gram variable on the positive side (almost all Gm+).

Smear from Agar comes 1st - the STEPS:

ALL STAINS START WITH THE PROPER PREPARATION OF A SMEAR (from agar usually):

1. Disinfect your table-top and obtain your incomplete Universal Precautions Lab Clothing.  Clean a slide WELL, dry the cleaned slide. Using your Sharpee, place a dime-sized circle in the center on the BOTTOM SIDE of the slide...
2. Heat your loop to red hot and cool it...
3. "Capture" a drop of water on your loop...
4. Spread the water on top of the circled area of the slide...
5. Heat your loop to red hot and cool it...
6. Obtain a culture on a test tube agar slant (or from a colony on an agar plate - for other preps see "Preparation of a Smear from a Broth")...  
7. Flame the test tube lid gently, remove the lid with your "pinky-finger" of the hand holding your loop and hold the lid  in your hand (NEVER lay a top or loop on a table top!).  Flame the LIP of the test tube gently.  Insert your loop into the test tube and go PAST the slant where the microbe is growing on the agar as a "film."  Lower the loop and gently pull it toward you as it glides gently across the SURFACE of the slant picking-up a small amount of gelatinous microbe film inside the loop.  DO NOT GET THE AGAR GEL ON YOUR LOOP!
8. Flame the lip of the test tube again as well as the lid; then, replace the test tube lid and place it in a test tube rack.
9. SMEAR your loop material into the water on the circled area of your slide.  MIX the water and microbe until the liquid is SLIGHTLY CLOUDY.... SPREAD that cloudy liquid outside the circle as much as possible to aid in AIR DRYING! 
10. Heat and cool your loop and place it in a test tube rack - DO NOT LAY IT DOWN ON THE TABLE-TOP!
11. AIR DRY THE CLOUDY LIQUID ON THE SLIDE COMPLETELY!
12. HEAT FIX the slide by passing it through a flame until the slide is almost too hot to your naked skin...  If you over heat fix the microbes will EXPLODE.  If you under hear fix the microbes will be washed down the drain during staining!

CURRENT (ALTERNATE) ACID FAST STAINING STEPS:

1. Obtain a properly made SMEAR with the small circle draw 3/4th of the way down the slide on the bottom of the slide (this allows you place to HOLD the slide when passing the primary stain through the flame).

2.  FLOOD the circle with the PRIMARY stain - make a "bubble" of primary stain (Acid Fast = Carbolfuchsin)

3.  Pass the slide through the Bunsen burner flame until your slide gets WARM and the bubble of stain "withdraws" slightly - evaporates some - about 5 X - NOTE: You should put a 1 ft square of paper towel under your Bunsen Burner to collect any spilled stain)


4. Acid Fast shake off the primary stain gently, obtain 1/4 to 1/2 dropper full of Acid Alcohol and spray it above the circle; WASH immediately with Water by aiming the stream ABOVE the smear... Do NOT Overwash!

5.  Place the slide on the staining rack and COUNTER STAIN with Methylene Blue for 2-3 min. Rinse lightly with water, BLOT dry and add immersion oil.
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INTERPRETATION CAUTIONS:

CAUTION: ANY PRIMARY STAIN THAT IS "heated" will stick to "HARD TO STAIN" cell parts... ENDOSPORES & the lipids of MYCOBACTERIA!
CAUTION: 1- ONE HOT PINK ROD makes the stain Acid Fast (otherwise known as Acid Fast Positive).  This is because Mycobacteria are hard to stain... you will see clumps of rods... and only a few are fuchsia or hot pink. 
CAUTION: sometimes the ENDOSPORES will take-up the primary stain and appear like HOT PINK ovals.. this is still an acid fast negative or non-acid fast stain because we are staining CELLS.... endospores are NOT CELLS and thus do not count.
CAUTION: if everything appears Baby-blue, the the stain is acid fast negative or non-acid fast.
RESULTS:
The Acid Fast Stain utilizes Carbolfuchsin (primary stain) which is a red-purple stain that has an affinity for lipids.  The counterstain is Methylene blue.  AF+ microbes vegetative cells stain as fuchsia colored sharp-ended rods while AF- microbes cells stain baby blue.
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USE THE ALTERNATE PROCEDURE FOR THE ACID FAST STAIN

PROCEDURE:

1.     Make a typical smear.

2.     After heat-fixing, cover the circled smear with Carbolfuchsin stain.  DO NOT PUT TOO MUCH STAIN.

3.     Hold the slide over the bunsen burner until the the slide gets HOT AND about 20% of the primary stain has evaporated (NOT ALL OF IT!!!!!).  Constantly move the slide in and out of the flame or up and down. Put paper towel under the Bunsen burner to catch any "spills." SHAKE off the excess PRIMARY STAIN after heating... then...

5.   Put 1/2 dropper full of ACID ALCOHOL on the smear and immediately wash it off with water...DO NOT OVERWASH!

6.     Counter stain with METHYLENE BLUE for 3-4 min. or so.  Wash with water... Blot dry, add immersion oil and focus under 10X

7.   View under oil immersion – 100X, draw.
Gram var+ M smegmatis

AF+




PHOTO of the sharp- ended Mycobacterium rods which are ACID FAST POSITIVE (bright fuchsia colored) on an ACID FAST STAIN - NOTE: that not ALL the microbes will take the stain because of the impermeable lipid layers of the cell wall


To be AF+ you must have 1 baby-blue rod and at least 1 hot pink rod


ALL hot pink is over cooked
Acid Fast rods... of M. leprai

COMMON ERRORS IN Acid Fast Staining:

A microbe is considered Acid Fast Positive when ANY sharp-ended rods are Fuchsia in color because this microbe is very difficult to stain - you must SCAN the whole slide to decide.
Another common error is calling an endospore a cell and erroneously deciding that the microbial culture is Acid Fast Positive.  All difficult to stain "things" can take-up the carbolfuchsin and endospores may stain fuchsia!  Mycobacteria are rods!
In the Acid Fast Staining procedure, the decolorizer is ACID ALCOHOL not acetone or ethanol as it is in other stains.
Don't boil off all the PRIMARY STAIN.. only about 20-25%!
Don't let put too little PRIMARY STAIN ON THE SMEAR!
Don't over-wash or under-wash!





Non-Acid Fast Baby-blue cells